Posts Tagged ‘SIP’

Intelligence for Drug Safety

Thursday, December 10th, 2009

Safety Intelligence Program
The Assertional Metadata (AMD) contained within our Safety Intelligence Program (SIP) represents the largest ever-expanding collection of known effects of chemicals occurring in the different tissue, drugs effects on clinical biomarkers of tissue injury and drug molecular mechanisms.

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About the Safety Intelligence Program

Wednesday, February 17th, 2010

Safety Intelligence ProgramA collaborative program for safety intelligence

The Safety Intelligence Program is an industry-sponsored initiative that embraces the expertise of its pharmaceutical members and other stakeholders to build the world’s most comprehensive intelligence resource for use in improving drug safety assessments. Joining the program brings a wealth of benefits, including access to the Safety Intelligence System and participation in an interactive community under the Safety Intelligence Program Members Forum.Bio-IT Best Practices Award 2009

An unparalleled resource for drug safety

The Safety Intelligence System represents the largest forever-expanding collection of known effects of chemicals occurring in the different tissue, drugs effects on clinical biomarkers of tissue injury and drug molecular mechanisms.

The System currently contains almost 100,000 individual ‘facts’ assertions relating to the liver responses, affected by over 5,500 different compounds in over 20 different species. These assertions distill the observations and conclusions made across more than 19 million documents and database records, including regulatory documents, drug labels, pre-clinical and clinical research journals.

Using our intelligent search technology, we automatically ‘read’ millions of documents and store key observations as ‘assertional meta-data’. This meta-data is stored in a semantically consistent format which dramatically improves the pace and efficiency of analysis. Although millions of documents are read automatically, a task which would take hundreds of highly trained experts many months to achieve, we are able with rigorous quality control by PhD level scientists to deliver over 97% accuracy.

Members Forum: A Global community

The Members Forum gives you the opportunity to interact with a rapidly expanding community of scientists (clinical or preclinical; chemist or biologists) all with a common interest in using the Safety Intelligence System to improve our understanding of mechanisms of drug-related adverse events. All Members have access to a series of large scale assertional meta-data analyses performed by us or other members and the opportunity to participate in a series of Webinars or other forms of interaction with other scientists. This creates the opportunity to learn from others about their applications of the Safety Intelligence System and the ever growing collection of assertional meta-data.

An intuitive search interface

The Safety Intelligence System is accessible using an internet explorer from anywhere in the world.Screenshot of the Safety Intelligence Program interface

As well as the usual ‘quick search’ box for keyword searching, the system allows searching by chemical structure. Advanced ‘assertional meta-data’ searching is also possible, for example, you can search for all compounds causing liver necrosis in seconds. Our unique format of ‘assertional meta-data’ allows you to complex analyses to be performed.

Any search can be saved as a favourite to speed up future searching and the system has in-built alerting functionality so you will be automatically notified of any changes in the data that impact a saved query.

Coming soon….

The content of the Safety Intelligence System is expanding daily. In the next three months, we will expand the assertional meta-data in the System to other tissues, starting with the cardiac system, followed by kidney. The list of data sources used is also expanding, we are currently working on the FDA New Drug Applications for liver effects – this will also be available in the next 3 months. The content grows according to the sponsorship of our Charter Members. As a Charter Member, you prioritise what is created built and when; in return Charter Members receive perpetual rights to the data.

The Safety Intelligence Program – How to get involved

Wednesday, February 17th, 2010

Access SIP

If you are already a member, you can access SIP here.

Free Trial

For a free trial of SIP, please email us at sip@biowisdom.com.

Join Now

Download the membership options leaflet.

Alternatively, email sip@biowisdom.com for more information or if you would prefer to contact us directly, please call our telephone sales department, United Kingdom +44 (0)1223 874838. Our telephone sales are open during normal office hours 09:00 to 17:30, Monday through Friday.

Demonstrations

You can access all SIP demonstrations and tutorials here or you can download the videos below.

Webinars

You can access all SIP webinars here.

More Information

The Safety Intelligence Program: Supporting Discovery, Regulatory and Pharmacovigilance

Wednesday, February 17th, 2010

This webinar introduces the Safety Intelligence Program, discussing current strengths and future directions.

Download BioWisdom SIP Webinar 11 February 2009BioWisdom SIP Webinar 11 February 2009
Download BioWisdom SIP Webinar 11 February 2009 Slides BioWisdom SIP Webinar 11 February 2009 Slides

AstraZeneca’s experience in the Safety Intelligence Program: Learning from history to avoid idiot-syncracy

Wednesday, February 17th, 2010

In this SIP series webinar Dave Cook from Astrazeneca’s Global Safety Assessment Team presents Astrazeneca’s experience of using SIP.

Download BioWisdom SIP Webinar 15 Jan 2009BioWisdom SIP Webinar 15 Jan 2009
Download BioWisdom SIP Webinar 15 Jan 2009 - AstraZeneca slides BioWisdom SIP Webinar 15 Jan 2009 - AstraZeneca slides

SIP Webinar: Chemoinformatics Analysis of Assertions describing Drug-Induced Liver Injury

Wednesday, February 17th, 2010

In this webinar Prof. Alex Thropsha and Dr. Denis Fourches from University of North Carolina present their work on chemoinformatics analysis performed using SIP.

Download BioWisdom SIP Chemoinformatics Webinar 11 Nov 2008BioWisdom SIP Chemoinformatics Webinar 11 Nov 2008
Download BioWisdom SIP Chemoinformatics Webinar 11 Nov 2008 Slides BioWisdom SIP Chemoinformatics Webinar 11 Nov 2008 Slides

SIP Webinar: Understanding Hepatobiliary Transport Inhibition

Wednesday, February 17th, 2010

This SIP webinar presents how a better understanding of hepatobiliary transport inhibition can be obtained using SIP.

Download BioWisdom SIP Webinar 23 Oct 2008BioWisdom SIP Webinar 23 Oct 2008
Download BioWisdom SIP Webinar 23 Oct 2008 Slides BioWisdom SIP Webinar 23 Oct 2008 Slides

An introduction to the Safety Intelligence System

Wednesday, February 17th, 2010

In this video you will see an overview of the Safety Intelligence Program’s web interface. The tutorial includes:

  • searching by keyword or phrase
  • viewing assertions
  • viewing properties and related terms of the word or phrase that you searched for
  • searching by chemical structures, sub-structures and Tanimoto similarity searching
  • the use of term lists for querying multiple terms
  • advanced searches. for example, what compounds with a carboxylic sub-structure are known to cause cholestasis?
  • viewing the original source document
  • exporting data

The tour takes just under 3 minutes to run. Use the controls at the bottom of the screen to pause or rewind the video.



Download Safety Intelligence Program OverviewSafety Intelligence Program Overview

SIP Quick Search Tutorial – Compounds that cause fibrosis

Wednesday, February 17th, 2010

In this tutorial we will use the Safety Intelligence System to identify those compounds that cause fibrosis in the liver. It includes:

  • using quick search to identify all the terms or synonyms containing the term fibrosis
  • selecting a sub-set of terms of interest
  • using this sub-set of terms as a starting point for a second quick search to identify those compounds with a relationship to the fibrosis terms of interest
  • exporting the data (including SMILES strings) to Microsoft Excel for further analysis

The tutorial lasts for just over 2 minutes.

Download SIP Quick Search Tutorial - Compounds that cause fibrosisSIP Quick Search Tutorial - Compounds that cause fibrosis

SIP Advanced Search Tutorial – Investigating the role of Carboxylic Acids in Hepatotoxicity

Wednesday, February 17th, 2010

In this tutorial, we will use some of the advanced search capabilities of the Safety Intelligence System to investigate how carboxylic acids may be involved in hepatotoxicity. Do they show an unusual profile compared to compounds that do not contain a carboxylic acid sub-structure? Is there a particular type of hepatotoxic affect, e.g. oxidation or oxidative stress. The tutorial will take around 5 minutes to complete. You can also download below the poster presented at the Society Of Toxicology, Seattle, 2008.  In performing this analysis we will use:

  • Searching by chemical sub-structure
  • User defined term list
  • Advanced searches between types of term, for example, compounds to biomedical observations
  • Exporting data for further analysis
Download SIP Advanced Search Tutorial - Investigating the role of Carboxylic Acids in HepatotoxicitySIP Advanced Search Tutorial - Investigating the role of Carboxylic Acids in Hepatotoxicity

Download Safety Intelligence Program - Carboxylic Acids Study Safety Intelligence Program - Carboxylic Acids Study