Posts Tagged ‘Omniviz’

Analysing PubMed Data in OmniViz

Tuesday, February 16th, 2010

This webinar shows how to refine a set of documents and its vocabulary in more detail.  It includes identifying and eliminating outlier records and unwanted themes by creating a subset view and using Gist to refine the vocabulary of the document set.

Tools Galaxy, Gist, Record Viewer, Group,
Query, View Editor and CoMet
Experience Level Intermediate
Length 51:00 minutes
Prerequisites None
Download BioWisdom OmniViz Webinar Dec 2008BioWisdom OmniViz Webinar Dec 2008
Download BioWisdom OmniViz Webinar Dec 2008 Slides BioWisdom OmniViz Webinar Dec 2008 Slides

Analysis of Valvulopathy Publications from PubMed

Tuesday, February 16th, 2010

This tutorial shows how to explore a literature data set, generate hypotheses based on that exploration, and probe the data to validate the hypotheses. It also describes how to investigate research trends over time.

Tools Galaxy, Gist, Record Viewer, Group,
Query, ThemeMap, Dynamic Query
and CoMet
Experience Level Intermediate
Length 8 pages
Prerequisites Please download the dataset from
the Download button below.
Download Tutorial - Analysis Of Valvulopathy Tutorial - Analysis Of Valvulopathy

Download Valvulopathy Analysis DataSet Valvulopathy Analysis DataSet

Analyzing Patents in OmniViz

Tuesday, February 16th, 2010

This webinar shows the first steps in an OmniViz  patent analysis.  It includes assessing the thematic content of the patent set and exploring the competitive landscape.

Tools Patent Harvester, Galaxy, Gist,
Record Viewer and CoMet
Experience Level Beginner
Length 43:30 minutes
Prerequisites None
Download BioWisdom OmniViz Webinar Nov 2008BioWisdom OmniViz Webinar Nov 2008
Download BioWisdom OmniViz Webinar May 2009 Slides BioWisdom OmniViz Webinar May 2009 Slides

Creating and Using Customized Files for Patent Analysis

Tuesday, February 16th, 2010

This tutorial explains how to export data from an OmniViz analysis into a data-specific synonym file.  It also describes how to process a view with that file, and how to use it in a CoMet analysis.

Tools AppLauncher, View Editor, Gist and CoMet
Experience Level Intermediate
Length 6 pages
Prerequisites Importing Patents
OR

Downloading with Patent Harvester
Download Tutorial - OmniViz Patent Analysis Using Customized Files Tutorial - OmniViz Patent Analysis Using Customized Files

Using Gist to Refine Your Vocabulary

Monday, February 15th, 2010

This quick start guide explains how to use functions in the Gist tool to  define synonyms and change the importance of specific terms in the vocabulary.

Tools Galaxy, Gist and Record Viewer
Experience Level Intermediate
Length 3 pages / 3:33 minutes
Prerequisites Understanding the Gist of Documents
Download Quick Start Guide - Gist Synonym Topics Quick Start Guide - Gist Synonym Topics

Download Quick Start Guide - Gist Synonyms VideoQuick Start Guide - Gist Synonyms Video

Understanding the Gist of Documents

Monday, February 15th, 2010

This quick start guide explains how to use the Gist tool to gain an understanding of the themes in a set of documents.

Tools Galaxy, Gist and Record Viewer
Experience Level Beginner
Length 2 pages / 3:47 minutes
Prerequisites None
Download Quick Start Guide - Understanding Gist Quick Start Guide - Understanding Gist

Download Quick Start Guide - Gist Introduction VideoQuick Start Guide - Gist Introduction Video

Understanding Thematic Relationships with CoMet

Monday, February 15th, 2010

This quick start guide explains how to use the CoMet visualization to discover the themes in your text data set.

Tools CoMet, Galaxy and Record Viewer
Experience Level Intermediate
Length 4 pages / 5:38 minutes
Prerequisites Understanding Thematic Relationships
(Galaxy)
Download Quick Start Guide - Omniviz Comet Relationships Quick Start Guide - Omniviz Comet Relationships

Download Quick Start Guide - Omniviz Comet Themes VideoQuick Start Guide - Omniviz Comet Themes Video

Understanding Thematic Relationships in OmniViz

Monday, February 15th, 2010

This quick start guide explains how to explore the Galaxy visualization, and how to discover the themes in your text data set.  The video also introduces the ThemeMap visualization.

Tools Galaxy, ThemeMap, Gist and Record Viewer
Experience Level Beginner
Length 4 pages / 5:22 minutes
Prerequisites None
Download Quick Start Guide - Related Docs Galaxy Quick Start Guide - Related Docs Galaxy

Download Quick Start Guide - OmniViz Basic Patent ExploreQuick Start Guide - OmniViz Basic Patent Explore

Importing Patent Documents into OmniViz

Monday, February 15th, 2010

This tutorial explains how to import a set of patent documents into OmniViz and process them.

Note: This download is a set of tutorials and auxiliary files—it should be installed into your OmniViz directory.

Tools Data Set Editor, View Editor
Experience Level Beginner
Length 2 pages
Prerequisites None
Download Tutorial - OmniViz Patent Harvester Download Tutorial - OmniViz Patent Harvester Download

Using Patent Harvester to Download Patent Documents in OmniViz

Monday, February 15th, 2010

This tutorial explains how to download data from the USPTO website using the Patent Harvester utility. It also shows how to import those documents into OmniViz and process them.

Note: This download is a set of tutorials and auxiliary files—it should be installed into your OmniViz directory.

Tools Patent Harvester, Data Set Editor, View Editor
Experience Level Beginner
Length 2 pages / 3:30
Prerequisites None
Download Tutorial - OmniViz Patent Harvester Download Tutorial - OmniViz Patent Harvester Download

Download Tutorial - OmniViz Basic Patent HarvesterTutorial - OmniViz Basic Patent Harvester