Posts Tagged ‘Data Integration’

SRS – specialist life science data integration

Monday, December 7th, 2009

SRS (Sequence Retrieval System)

SRS is a proven and scalable data integration platform that is used at over 300 commercial and academic sites delivering genomic data to thousands of users. SRS facilitates the rapid development of applications and algorithms, as well as bioinformatics portals for the Internet or Intranet, making the data efficiently available to entire organizations.

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SRS Version 8.3

Wednesday, February 17th, 2010

New Functionality in SRS 8.3

SRS version 8.3 includes some exciting new functionality as well as improvements in the user interface and support for new platforms. The latest developments continue our aim of bringing intelligent medical search to the desktops of scientists. In the latest version, scientists are able to add their own annotations to entries that become searchable with SRS. Furthermore, SRS now allows email alerts to be added to any favorite search.

Download Biowisdom SRS 8.3 FactSheet Biowisdom SRS 8.3 FactSheet

Read more about SRS Version 8.3 »

SRS WSObjects

Wednesday, February 17th, 2010

SRS WSObjects enables developers to quickly build life science informatics solutions incorporating the full capabilities of SRS. Using SRS WSObjects’ comprehensive APIs applications can be developed to address internal needs whilst exploiting the comprehensive data sets and analysis tools provided by SRS. Custom interfaces can be built to tackle novel problems, such as constructing workflows and analysis pipelines to assess gene expression results or provide protein annotations. All applications can be run against a single SRS server, which is also used to support the web interface, ensuring a simple and robust SRS architecture.

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SRS Technical Requirements

Wednesday, February 17th, 2010
Download Biowisdom SRS 8.3 Techical Requirements Data Sheet Biowisdom SRS 8.3 Techical Requirements Data Sheet

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SRS Training

Wednesday, February 17th, 2010

Training is not included with the purchase of the software licenses, unless covered in your contract with BioWisdom. If your organization would like additional training on the use of our software, our scientists can provide this on-site or via web-based conferencing. Training can include best practices as well as the mechanics of using our software.

For more information or to discuss training services with BioWisdom, contact us at sales@biowisdom.com

Training Module Days
SRS Configuration and Maintenance
a) Introduction 0.5
b) Basic Administration & configuration (includes Tomcat for beginners) 1
c) Tools 0.5
d) SRS Prisma (customer request) 0.5
e) Troubleshooting 0.5
SRS Database Integration
a) Introduction to parsing and Icarus 0.5
b) Integrating flat file data 2.0
c) Integrating XML data 0.5
d) Views, loaders, entry views, JSP pages 1.0
e) Integrating relational databases 1.0
Developing with SRS (module based)
a) Introduction to querying and retrieval in SRS 0.5
b) Writing Icarus scripts 0.5
c) SRS WSObjects (language specified by customer) 1.0

SRS Webinar: SRS 8.3 – Applications and Integration at the Strasbourg Bioinformatics Platform

Wednesday, February 17th, 2010

In this SRS Webinar Frédéric Plewniak from BIPS demonstrates the SRS integration within the Strasbourg Bioinformatics Platform

Download SRS Webinar: Applications and Integration at the Strasbourg Bioinformatics PlatformSRS Webinar: Applications and Integration at the Strasbourg Bioinformatics Platform

Download BioWisdom SRS 8.3 Webinar June 2009 - Slides BioWisdom SRS 8.3 Webinar June 2009 - Slides

SRS Webinar: SRS 8.3 – Features, Functions and Benefits

Wednesday, February 17th, 2010

In this SRS Webinar BioWisdom and Mark Miller from Merck Inc. present the new features of SRS 8.3 and some of the benefits of the integration of data and tools in the SRS interface

Download SRS Webinar: SRS 8.3 - Features, Functions and BenefitsSRS Webinar: SRS 8.3 - Features, Functions and Benefits

SRS Remote Administration Services

Monday, December 7th, 2009

SRS (Sequence Retrieval System)

In order to function efficiently, SRS requires regular expert maintenance. Many SRS customers have a dedicated SRS Administrator to deal with these issues, but equally, many customers have asked us to administer their SRS installation in order to release their staff for higher priority projects.

This service is designed to perform all the functions that an in-house SRS administrator would perform, and includes:

  • The installation of all software updates, upgrades and patches
  • Administration of all supported databases
  • Administration of all supported tools
  • Option: administration of in-house databases, relational databases and third party databases
  • Option: administration of non-supported tools